CELL FREE FETAL DNA ANALYSIS (cffDNA)

Today, Down syndrome (trisomy 21) screening in the baby during pregnancy is almost routinely performed. For this purpose, a blood test is made from the mother to assess whether the baby has a high risk of Down syndrome, and these tests are called intelligence tests among the public. If the risk is high, amniocentesis is performed to confirm the diagnosis of Down syndrome (and trisomy 13, 18). Amniocentesis procedure has some risks, although rare, so remedies have been explored to confirm the diagnosis with a risk-free method. The examination of free fetal DNA in maternal blood (free fetal dna analysis in maternal blood) has been developed for this purpose, so the aim is not to perform invasive procedures such as amniocentesis or CVS, cordocentesis. Therefore, cffDNA study is called non-invasive prenatal test (NIPT).
What is Free Fetal DNA?
(Free fetal DNA = cffDNA = Cell free fetal DNA)
Free fetal DNA is a freely detected genetic material that passes from the placenta to the maternal blood during pregnancy and is not found in the cell. Fetus intact cells can also be detected in maternal blood, but these are very rare and not useful for genetic examination. In the mother's blood, it has been reported that the cells belonging to the baby can remain for years, in a study, the cells belonging to the pregnancy 27 years ago were detected.
The free genetic material of the fetus in maternal blood can be in the form of DNA and RNA. It is thought that the main source of DNA is the apoptosis of sitsityotrophoblasts in the placenta. Since free DNA originates from the placenta, placental mosaicism and fetoplacental incompatibilities can rarely cause false positive and false negative results. Similarly, the diagnosis can be misleading in mosaic trisomy situations.
Although free fetal DNA can rarely be detected as early as 5 weeks (according to the last menstrual period) in pregnancy, it can usually be detected after 9 weeks. The detection of free DNA in the mother's blood before the fetal blood circulation begins suggests that this is due to trophoblasts. The half-life of free fetal DNA in maternal blood was determined to be short enough to be expressed in minutes. For this reason, it was reported that it could not be detected in the mother's blood approximately 2 hours after birth.
At the end of the first trimester, approximately 10-15% of total DNA in maternal plasma consists of fetal DNA, while this rate increases and reaches 50% in the last months of pregnancy. It was found that the fetal DNA concentration decreased as the mother's weight increased. Lo et al. found that fetal free DNA constitutes 2-6% of free DNA in maternal blood. The free RNA half-life was also found to be short enough to be measured in minutes, but was reported to be detected at a more stable concentration over the months of gestation.
Free fetal DNA test for prenatal screening:
- Free fetal DNA should not be used as a routine screening test. It can be used as an additional screening test recommended by informing the family.
- cffDNA is a high accuracy alternative to screening tests used today, but it is too expensive to be routinely applied, so screening tests (double, triple, quadruple test) should be continued today.
- It should not be recommended to low risk group and multiple pregnancies because there is not enough evaluation in these groups.
- If the test result is negative, it does not guarantee that the baby is completely normal.
- In case of positive test results, genetic counseling and invasive tests such as amniocentesis and CVS should be recommended for definitive diagnosis.
- The test only gives information about common trisomies (21, 13, 18). It cannot give information about other genetic diseases. This issue should also be mentioned while informing the family.
- Before the free fetal DNA test, family history should be taken in terms of genetic diseases so that other tests can be applied in terms of genetic diseases.
- If a baby's structural anomaly is detected on ultrasonography, invasive tests such as amniocentesis should be recommended because cffDNA can only detect trisomies.
- Free fetal DNA test cannot give accurate and precise results like invasive tests such as amniocentesis. In this respect, these tests have not been replaced, but it is an alternative option.
- It can be suggested as a screening test to the high risk group in the indications listed below. It will identify babies with Down syndrome with 98-99% sensitivity (with 0.5% false positivity rate).
When free fetal DNA test is recommended:
- Pregnancies where the mother's age will be 35 or over at birth
- Monitoring fetal "anoploidy" findings on ultrasonography
- Pregnancy history with trisomy
- High risk detected in double, triple and quad screening tests
- Balanced robertsonian translocation with increased risk of trisomy 21 or 13 in parents
Areas where free fetal DNA can be used outside of trisomies:
- It can be used to determine the sex of the baby in the early weeks of pregnancy in the presence of X-linked miscarriages in the mother. With other methods, sex will be detected later in the week and there will be a low risk in invasive methods. Duchenne muscular dystrophy and hemophilia are the most common x-linked diseases. These diseases are evident in male babies because there is only one X chromosome and there is no second X chromosome to compensate the diseased X chromosome.
- CffDNA analysis can be performed for genetic study in families at risk for hereditary diseases.
- It can be used for Rh factor scanning. Due to the high cost, it is not routinely used for this purpose, but it can be used in the case of immunization.
- Some studies have reported that cffDNA was detected at a higher concentration in pregnancies that will develop preeclampsia. It has been reported that it can be used to predict preeclampsia.
- The determination of the gender of the baby in the very early weeks of pregnancy (4th-5th weeks) with this method may cause abortion-abortion procedures by choosing gender. In this respect, ethical debates have occurred.
False negativity situations:
- Not enough DNA material can be obtained
- The amount of cffDNA can differ between individuals and is not found in sufficient quantity.
False positivity states:
- Contamination
- Undetected vanishing-twin syndrome
- Placental mosaicism
- Maternal mosaicism
Approximately 2-5% of the blood samples taken for the test cannot be obtained. In this case, blood should be collected again and sent for analysis. This situation should be explained from the very beginning when informing the patient.
It is considered that free fetal DNA analysis in maternal blood will expand in the following years and its sensitivity will increase. It will likely replace invasive tests completely and will be used for diagnostic purposes, not screening. In the following years, widespread use of high-sensitivity screening tests will provide significant benefits, because today's prenatal screening tests do not detect approximately 15-20% of babies with down syndrome (since the screening test results are normal). In addition, 1 out of every 20 pregnant women undergoing amniocentesis due to high risk is found to have a baby with down syndrome, and 19 pregnant women are exposed to unnecessary invasive procedures.


- TESTS AND ANALYSIS IN PREGNANCY
- FETAL NUCHAL THICKNESS MEASUREMENT
- NUCHAL TRANSLUCENCY SCAN TEST
- TRIPLE SCAN TEST
- WHAT IS QUADRUPLE BLOOD SCREENİNG TEST?
- INTEGRATED TEST

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